NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206678_10204546

Scaffold Ga0206678_10204546


Overview

Basic Information
Taxon OID3300021084 Open in IMG/M
Scaffold IDGa0206678_10204546 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)979
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034539Metagenome / Metatranscriptome174Y
F058067Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0206678_102045461F058067N/ATIYFQPAATARKICVKHLNDTVDLNQLFTPEVLTDDVLKSLEPIVAAKFKYGDEIDVENLTEMLEADVTEKS
Ga0206678_102045462F034539AGAAGMLPKNLNTAKLKVKHVLGNHTTLPSYPDAEDIIYELIRDYCGKVAQEIKFTNVSLKKKYSLDDEKANAIIMKLRNDKIIKVSLSNSAYTTYEVIINPYE

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