Scaffold Ga0206678_10000082

Overview

Basic Information

• Taxon OID: 3300021084
• Scaffold ID: Ga0206678_10000082
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54483
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (83.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025393	Metagenome / Metatranscriptome	202	Y
F040106	Metagenome / Metatranscriptome	162	N
F042906	Metagenome / Metatranscriptome	157	Y
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206678_1000008234	F025393	AGGA	LFKTHYEIVVPYQHQYESSKLIRKTAEDGHRYAMFVKGNDHLINGRTYCFKDEDGNYVSTFVSQYSDIIDNNLEPEIKDAVLGLHEKGYLTFTSCQGHDDSKHRYIGVLFNTKEQKKEFISNVDNLKCDIHWYDNVINTVERPCGAIPWWSDGGITLHIVYDDSLYEEAPQQLRRQKPYTDLDLTKFWNIQTCRNYRHYECIVLSFGYPMLEKSIWKTLKKHFFYNHYKVTSAYHQFVNKVNKLPEYLA
Ga0206678_100000824	F040106	N/A	MRYSGPESLAPSDATKFDVLIQMEVLSGCEQGCLGCFVDKAIDPEVNQAIIDRAKELADGVKRVGGNLREFVIGPTDLFSAKNTKDILTNPTVQAIMREHTNARIASPAKFDNASMEKVREIFAILDDLDAYRREMVIEFIMPIGRINEMLDDDDYYNRVMEKIEFFKNETPKMMDWSWTLQASNVVGKQIDKEKYNRLIDRSVNDFGTIMEMNPAFARAPNQIIQRNNLFAWNRFLESVIDEDNRKEAVMSMANLYCNSINFVGITIVPGENGPTTHLNVMLHEQAFFLSNKNLDVTGLSFEEILQRKNELITKGINRSSKVKDCSDCKFAVACANRLVFEAQESLNIDGCVLPKETLKYYNPFDFTWNDDATQYKMKDGA
Ga0206678_100000828	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKNFIRDITDKGILVDEILIGPTDFLASENFYEVMPSLIDIINENSPILAFVSTLIDGDLPRWIAFITNNINTDTEIEIGIATNPHKFFDKEYVDHIHKMLQYIDENLEHEVTYTFVVNIRDYGLDYVKLHKSAVERFNTILDFIPSVSRSHKPKLILDTLDKFNDFFDELSAYKETKLNNIMVDHSHGGMNYTVLNYKKGEWFISPFMYENMALYHEMFKVDTFDEVLPILESQLERVKNTECETCPLLMSCYNRKIILLRDYLGVNRCIAPKKNMLAHIHNYNAPAQTMYKWDGYTVEGDKNGYRKRFLVTEDGDKELDRIKAISYVK
Ga0206678_100000829	F080057	AGG	MLNSSWEDIVKHGGVGEEFTSVSSMGQYKIQVTLELLEGCSYMCPGCFVKRRGNWHPKSIQLFYDLAYALKDNSDIVLDDIVIGPTDFYGAENLDEIIKNHRLASAILMMPEDSRNIQHNCSIMGSLSEDDILGKIKSIEKSPLGQVVKSWDVQIALDLNRVLDDPVYRNALDTRVNHFKDSTLDFEISMATNIVDGIEDRLYEAIDYIRETYNTVIEILPSVVRSFNNTTKHGDKLFAWNDMLTNLSTDVNRFKNKFHFLQGDLSHKAFHYAVVNIHHGKLYASPFIYENAQIYKPDFEIVQDRPILDAILDYKHKVVSEQLKNSFDKECGTCKYLNVCSNRLIPKVMDTMFKGRSECILNKEVIALFDNEEYHGNSY