Scaffold Ga0210380_10215985

Overview

Basic Information

• Taxon OID: 3300021082
• Scaffold ID: Ga0210380_10215985
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 868
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9208
  • Long. (^o): -106.9484

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057161	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210380_102159852	F057161	N/A	VIGGAAANAATGAGLTVIVLDWLMVLPHASVNVQLSVTLPPHAPGGALSVDVTLPLIRHIPLAPFV
Ga0210380_102159853	F057161	N/A	MGAAAANAATGAGLTVIVLDWLMVRPHASVNVQLSVTGPPHTPGGALSVDVTRPLIRHVPLPPFV
Ga0210380_102159854	F057161	N/A	MGAAAANAAGGAGLTVIVLDWLMVRPHASVNVQLSVTGPPHAPGGALSVDVTLPLIRHIPLPPFV