Basic Information | |
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Taxon OID | 3300021082 Open in IMG/M |
Scaffold ID | Ga0210380_10072635 Open in IMG/M |
Source Dataset Name | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1503 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9208 | Long. (o) | -106.9484 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006963 | Metagenome / Metatranscriptome | 361 | Y |
F027343 | Metagenome / Metatranscriptome | 195 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210380_100726351 | F006963 | N/A | LLATLLCALGTTQASAQNVVSQGLLDLDDDERNASFTLILKESDRRCDQVIRTLFTGTLLGVDEWEALCKDRNAYSISVLVEPDGTTITSLTCRELLATSKRLLHKAGSRSRAVGCRIK |
Ga0210380_100726352 | F027343 | N/A | MNERLSAMRCLFCNAEMVLMEAVQADPTTLPSFEHRTFLCLACHRVERRLAYAGARAPSATSHSASPTTKLNIGSGMPQSAWSRAVEKVLHKQIELNGRTAAKRRPDIPSTVEKVGSGRRNAEERPRPSTKKSIDLVSELNRIWDDPRPAADKRFEPPATPKAE |
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