Scaffold Ga0194055_10000715

Overview

Basic Information

• Taxon OID: 3300021079
• Scaffold ID: Ga0194055_10000715
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-9m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26864
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (51.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.775
  • Long. (^o): -93.818

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F026825	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194055_1000071512	F012040	N/A	MINWMRGLTKENPKNLLELPDVNIADWIINGQQAELALIMRNPVLRMALRIVAESMPIAMPSHGSKESDIVFAAGITAGYAHCLENLRKLSVVDATKELEATFDDKN
Ga0194055_1000071519	F004664	N/A	MNKRTGYKILNEHMVIPGGWHYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPGNLDDLIVEYACRNGADCTYDEVELSKPAGRKSLEIGDVIRFSMSLLHGLTIGGGKVGQEEANRRANICAGCRFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDEQLQSCEFCGCFIRSLVWFPIETLYKFADSTENENLPDHCWKKRPCTAT
Ga0194055_100007152	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWAAITLADGSTANACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAVADSSFTQTETIPAGVNEFPWADGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYSGGKYTLVQPFTSASGTKGTVFSVNPTWTTASYEGAFVVTPYVFKSHIVRPINRVGDLSWMPTNYMGEWQWVTGAYKLSVDCVDPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0194055_1000071522	F012111	N/A	MSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFVSPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLMGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSDPLIFNGVGIRRANVDEIKCGRMMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQTISLLTNGALGSRSVITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGADQSIQFWEISKAERSDKSVASDKKKIEWLIQTRGYNFEIPFGLKRLDSGDIFIDELDGEDSLDGQTNYVDRKVSFNVKYRPDQYPGWIDWANWSECATTDQCGNLCPTLKNFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSVRVHAYDVQESAVGECRTFQGCKTLEGCDVNPFTYTSE
Ga0194055_1000071524	F005740	GAG	MKLIVQDIQSTIARVIGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTLSGSVWIDGEKLILALPYVQSTKKFTSLTGVIRDATNTASRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDSKPMTVMAKMRHVNAATANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF
Ga0194055_1000071526	F007361	GGA	MSVLFSLENDCLGIHEQGATDPNWKQSIEGYRLIHKYVADCSTYGYLPKAVVDDSIKVYVKKDAKSSSKECTERFGYEVHLQSFEFIREYADQWACSNDVMVIEEGELFKLDTLRRIWVHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEVF
Ga0194055_100007158	F026825	AGG	MTGHHAFVRDMSIGVGGPVLGLLGNAIFSEPNLKGASLALGALAALLTCVVKSIELYRKIKNNK