NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210381_10139535

Scaffold Ga0210381_10139535


Overview

Basic Information
Taxon OID3300021078 Open in IMG/M
Scaffold IDGa0210381_10139535 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9197Long. (o)-106.9492Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003146Metagenome / Metatranscriptome505Y
F060129Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210381_101395351F060129GGAGGMDEFVFEVFITAVVRVRAETEADARQAVTSSAIAAPSAAEISLANQANFIEGKNASISNVDFSIDSNSIKLHEEALTSL
Ga0210381_101395352F003146AGGAMPSRRSSKKDSPAKLAGRMKRRWRVVLLRAKGEILGEVEASDVASAKAVAAVQFDLDEIQRGRIMVQELG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.