Scaffold Ga0194057_10073872

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194057_10073872

Scaffold Ga0194057_10073872

Overview

Basic Information
Taxon OID	3300021072 Open in IMG/M
Scaffold ID	Ga0194057_10073872 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-15m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1263
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.775	Long. (^o)	-93.818	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038113	Metagenome	166	Y
F042316	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194057_100738721	F042316	N/A	MTPSSPSSWSSTVASLRKASDGRLAGGREAPAHFERYVNLLFRLTVAHKEAAIRLTRLASSSPAWVLTGGYDLRGGNAIRLTDGRYLRLVAVLELDVSAGGQLRFQALTWQYQNAIDDDSWVFRADYSRTQIAAASPPRGHLHVDGTLRQPDVLRPKQPLGRVHFPCRRPTLEAAVVLLADEFGVPTNAPHEVWRAAIAEHEARSARLFDS
Ga0194057_100738722	F038113	AGGAGG	MLPTKTYILTRDEVVELVRFKSLEQGHDPAEIFRNYAAGDWRHFSQMLEAYGLCAMLPKDDPVFTE

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