NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194057_10073872

Scaffold Ga0194057_10073872


Overview

Basic Information
Taxon OID3300021072 Open in IMG/M
Scaffold IDGa0194057_10073872 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-15m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1263
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038113Metagenome166Y
F042316Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0194057_100738721F042316N/AMTPSSPSSWSSTVASLRKASDGRLAGGREAPAHFERYVNLLFRLTVAHKEAAIRLTRLASSSPAWVLTGGYDLRGGNAIRLTDGRYLRLVAVLELDVSAGGQLRFQALTWQYQNAIDDDSWVFRADYSRTQIAAASPPRGHLHVDGTLRQPDVLRPKQPLGRVHFPCRRPTLEAAVVLLADEFGVPTNAPHEVWRAAIAEHEARSARLFDS
Ga0194057_100738722F038113AGGAGGMLPTKTYILTRDEVVELVRFKSLEQGHDPAEIFRNYAAGDWRHFSQMLEAYGLCAMLPKDDPVFTE

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