Scaffold Ga0206684_1013303

Overview

Basic Information

• Taxon OID: 3300021068
• Scaffold ID: Ga0206684_1013303
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2957
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011337	Metagenome	292	Y
F013815	Metagenome / Metatranscriptome	268	Y
F023622	Metagenome / Metatranscriptome	209	Y
F072442	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206684_10133032	F023622	GAGG	MKTFREFRGNTPTQLVEQVYFKIRIPDMSTMFMKASSESAVKLDMRQKLKPDVVKEVSIERVTKAEMRKIYRAMGQGKEDEKETEEEK
Ga0206684_10133034	F013815	GGAG	MYYVQYEKTLPPWYIGTDKVQAETSEDAVKEFYKHHNSFEERVRSVREVQDTYQK
Ga0206684_10133036	F072442	AGGA	MKTFKEFFQLGVTKPSKFDVQNYLNHLGTRLMQVPDIIRTIERHFKNIKKLKLDRSGKKVLSFEEFEPEKNEKV
Ga0206684_10133037	F011337	N/A	FKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYNGLGKLKKMQGGKRSVSAFFNIEPIVIETGIKSEGGYVVEMDADILVASQDDISSQPDKTGRRWVTLSSLMNTPTDPDPGLGGGAKLKGMEKDISGMLVDIVTKHSDITPLPNINKAWNYLGKSIGGKEKSLIIKDYIDGMEKIMKKHSKVLGSLLTDYTKKRIQEPDPDSGDRPMWDELVVNNFKIKKVHIGPEFGPDWEDDDDIDGFPFELYQDTGDMADYITRTVQRIKL