Basic Information | |
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Taxon OID | 3300021068 Open in IMG/M |
Scaffold ID | Ga0206684_1013303 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2957 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.6907 | Long. (o) | -122.3448 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011337 | Metagenome | 292 | Y |
F013815 | Metagenome / Metatranscriptome | 268 | Y |
F023622 | Metagenome / Metatranscriptome | 209 | Y |
F072442 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206684_10133032 | F023622 | GAGG | MKTFREFRGNTPTQLVEQVYFKIRIPDMSTMFMKASSESAVKLDMRQKLKPDVVKEVSIERVTKAEMRKIYRAMGQGKEDEKETEEEK |
Ga0206684_10133034 | F013815 | GGAG | MYYVQYEKTLPPWYIGTDKVQAETSEDAVKEFYKHHNSFEERVRSVREVQDTYQK |
Ga0206684_10133036 | F072442 | AGGA | MKTFKEFFQLGVTKPSKFDVQNYLNHLGTRLMQVPDIIRTIERHFKNIKKLKLDRSGKKVLSFEEFEPEKNEKV |
Ga0206684_10133037 | F011337 | N/A | FKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYNGLGKLKKMQGGKRSVSAFFNIEPIVIETGIKSEGGYVVEMDADILVASQDDISSQPDKTGRRWVTLSSLMNTPTDPDPGLGGGAKLKGMEKDISGMLVDIVTKHSDITPLPNINKAWNYLGKSIGGKEKSLIIKDYIDGMEKIMKKHSKVLGSLLTDYTKKRIQEPDPDSGDRPMWDELVVNNFKIKKVHIGPEFGPDWEDDDDIDGFPFELYQDTGDMADYITRTVQRIKL |
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