Scaffold Ga0206684_1003600

Overview

Basic Information

• Taxon OID: 3300021068
• Scaffold ID: Ga0206684_1003600
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5704
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F055786	Metagenome	138	Y
F084346	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206684_100360013	F055786	N/A	MICSYCYTSHIKPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKDGTWMDYKPPAIFGRKNQEKIVSKKKSIGAVTDKQFTGDLGKFMK
Ga0206684_10036006	F084346	AGAAGG	MTFHTTVPRYQVETSNEQFQSPTKKQAEDIYQKYVNQKIPCELFLNGELQKEFKPL
Ga0206684_10036008	F000615	GAG	VRRNQNNIVSGLERPENIMCRIRSFYECSDGTMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHVEMTV