Scaffold Ga0206684_1002013

Overview

Basic Information

• Taxon OID: 3300021068
• Scaffold ID: Ga0206684_1002013
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7580
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007946	Metagenome / Metatranscriptome	342	Y
F008050	Metagenome	340	Y
F008525	Metagenome / Metatranscriptome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206684_100201310	F007946	GAG	MSTRNLIDNIKKGDAMKSNNAFNSIMHDKLLDALDNHKQEVASTMYGASNDAPVAEEPAVETPEGEVTTDENV
Ga0206684_10020133	F008050	GGAG	VFSRKTLELLLTNYININNGLRTPCAEKQKFEKLIKETEALLKSKPLDVIYPDGMTALEYAHKLAKEANDRMHMS
Ga0206684_10020139	F008525	AGGAG	MKTFKDSFNAVLEAKLKLPKGEKVAKEYNKLGRKKKTSAVITDKFNLYIDGIKMDSHKSLKAAEIALKDFINLMGA