Scaffold Ga0206686_1042053

Overview

Basic Information

• Taxon OID: 3300021065
• Scaffold ID: Ga0206686_1042053
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1367
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004989	Metagenome / Metatranscriptome	416	Y
F099860	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206686_10420531	F099860	N/A	GAEWDTIQLNSTDGAPESNAGEKIILEDASESDDGDMTFLQMEKQTTGTQMNFYFTIAGSDGAGTLSVGRQAMTLNSSTFKEAGDTETADTGIMQQVSAAIANAAVTMA
Ga0206686_10420533	F004989	GAGG	MSIKLEELNNEKERLEGDRKTLLDRLQEYQQGLTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEDEKESSDDDS