Scaffold Ga0206686_1000030

Overview

Basic Information

• Taxon OID: 3300021065
• Scaffold ID: Ga0206686_1000030
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43644
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (79.66%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F047731	Metagenome	149	Y
F090847	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206686_100003012	F090847	GGAG	MDEFEIEWIPEDTGAPYTEIDMAKPEISEIPSHLIDKICKKKFGHINWARMSQIGPDDLKGNPGEIDYPNGIIYFKHKNFI
Ga0206686_100003014	F000720	GAGG	MTLIKENTKVRTEIPNRMMSATFALPIDGRKVIGIVNYIPDKTGLVPLAFWMKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNIIGQMANYLYKNMEDIILGKDINKKQRMLSTDPYDMKE
Ga0206686_100003021	F003020	AGGAGG	MPDISRFKSVSVSTGTHMKLVDLAHNRFEVPVSVQKVIEFLLEKEMRKKHGRSNGRARR
Ga0206686_100003022	F047731	AGTAG	MKKETPGVTYSSNDPVEITLGVCEQCRAYVPFIRLITGHETSRVYQCMTCKAHHTQYLNGKVVFNYIEDSLTLNRN