Scaffold Ga0215015_11022179

Overview

Basic Information

• Taxon OID: 3300021046
• Scaffold ID: Ga0215015_11022179
• Source Dataset Name: Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Colorado
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18336
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location

• Location Name: Huntingdon County, Pennsylvania, United States
• Coordinates
  • Lat. (^o): 40.6949
  • Long. (^o): -77.9199
  • Depth (m): .9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010513	Metagenome / Metatranscriptome	303	Y
F020585	Metagenome / Metatranscriptome	223	N
F032765	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215015_1102217913	F020585	AGGGGG	MLRNTLRMINQQDQWFNQLRREESARRMLRYSLYQALEQVERLLESDVMEVPMEMQARLRRIVEAVDPQLAYRVDQSGPNALDIQDIIFEAQDQLIKQMRA
Ga0215015_110221793	F010513	N/A	VYLACPNRCSTNRFEVWNAAVFVDEHGRYLEYRTEEAALYRCTECGSPALDLGEVPSAMQADREAEERTLEYACPNCEALFAAPSEQNPIVCPECGQTFVVAT
Ga0215015_110221799	F032765	AGGAGG	MKVIVNFSNILVAIILLLIGLAVLTRHRIASYVVGGFIAVLAVLSILAALKILTVSSGPITIG