Basic Information | |
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Taxon OID | 3300020814 Open in IMG/M |
Scaffold ID | Ga0214088_1847138 Open in IMG/M |
Source Dataset Name | Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Toronto |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1820 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium GW2011_GWF1_44_10 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Toronto, Toronto, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 43.6629 | Long. (o) | -79.3957 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021489 | Metagenome / Metatranscriptome | 218 | N |
F049316 | Metagenome / Metatranscriptome | 147 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214088_18471381 | F049316 | N/A | AEFTGKTLSAIYRDALDEYFDRFVDTQLYLAINNYFAKLYFQYDIGTPDIYNIIMSGKLADTAMIIAEAVKQLPQEPKAQELIDEGMRLISILSK |
Ga0214088_18471383 | F021489 | AGGAG | MSIERKIGSVQEYNLLKLLKANSDLKRFGVEWIKLDHNLCRAFATNSYALIIAELEPNQWHDIFDGLPELVFITKLKRDEVHYFEAKELEKFNYLSVFEAVGKEPNYQPVMHFDLELLRNLTDKFDDVYFVKQSGLALFMKLEGDKYPAGSYYGALMPK |
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