Scaffold Ga0214088_1847138

Overview

Basic Information

• Taxon OID: 3300020814
• Scaffold ID: Ga0214088_1847138
• Source Dataset Name: Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1820
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium GW2011_GWF1_44_10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.6629
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021489	Metagenome / Metatranscriptome	218	N
F049316	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214088_18471381	F049316	N/A	AEFTGKTLSAIYRDALDEYFDRFVDTQLYLAINNYFAKLYFQYDIGTPDIYNIIMSGKLADTAMIIAEAVKQLPQEPKAQELIDEGMRLISILSK
Ga0214088_18471383	F021489	AGGAG	MSIERKIGSVQEYNLLKLLKANSDLKRFGVEWIKLDHNLCRAFATNSYALIIAELEPNQWHDIFDGLPELVFITKLKRDEVHYFEAKELEKFNYLSVFEAVGKEPNYQPVMHFDLELLRNLTDKFDDVYFVKQSGLALFMKLEGDKYPAGSYYGALMPK