Scaffold Ga0214088_1635193

Overview

Basic Information

• Taxon OID: 3300020814
• Scaffold ID: Ga0214088_1635193
• Source Dataset Name: Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7254
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.6629
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038290	Metagenome / Metatranscriptome	166	Y
F055836	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214088_16351932	F038290	AGGAG	MNTTAIDQSGTTQDFGKIRVRTASRSISPLRRFRNLVELSDWDDAVLRHGCEIDAFCWMLAVGSALLLIPVSFLVMKG
Ga0214088_16351936	F055836	N/A	MESCEGEVVAIYRKKWSRQFLGFVAVTLRWPMLLLLTLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPAASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFKKDRDLVGTIMKNLKLTRTLTGAKTIAVAGQGPRFFKSHFPYEQPFVYGLKGRVFSVVETVEQVAATNGLTRSETTVAILGVGEIGAAIIANLKEKGYRAVGIDIRIAEGRVEIGREGMETLRKADLIVVQTPRGDDVVPYYENLKKTAILIDDAHPRITVRPGEVKFYKVAIGRSGVEFKPPLPGYEKYWIPGCVQESMVVAESGKVDMSQEDFNKRSKELGFFAHLVDDR