Scaffold Ga0214088_1376357

Overview

Basic Information

• Taxon OID: 3300020814
• Scaffold ID: Ga0214088_1376357
• Source Dataset Name: Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5837
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.6629
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104373	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214088_13763576	F104373	AGG	LKSWQLNKRVGDLSEKLTPVNSGVVRLDYYSFTEPEKQLFNKISEMQDKYGDSPPADVLEANREFIFKALEVISGRVLELFMFVNQELLGDEIEAWYFKLHFYNFFVDLNECLQRVRKWPEDERERFLKDMKTSGNIDRAFRIPRGPETEFKKKKARGS