Scaffold Ga0214088_1298998

Overview

Basic Information

• Taxon OID: 3300020814
• Scaffold ID: Ga0214088_1298998
• Source Dataset Name: Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3091
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.6629
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021528	Metagenome / Metatranscriptome	218	N
F051104	Metagenome / Metatranscriptome	144	Y
F069750	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214088_12989982	F021528	GGAG	MIDTLKVMLNDYRISSDSDIRVQPASYELGTGTKVEYPLFETPEQRFYGAKAYLNEDNWNLTLKPLAGGRAVGAFLQLSIPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLKEADISRVDTFKNIEPEEPFSCYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLAEMRERQLETGNLPPTMRFEHRLLNKQKVQSVYGLSRVEDIFRGGYQVIREKQVESWKNSLFNFTAEEVVLLGSRQLEQEMRVFKEKFPSNWFSKFLKAYGAYYLASYAGKEVVIEALQAFEADRMKLWRAVQVFEEAEKELLVLKQEEGSSKTLGVLYEELRRKVCLN
Ga0214088_12989983	F051104	AGGAG	LFELMLAKAIEEEAKLSQELIKEGFSHAFKAGELIQEVKNMLNSEEALWEWLEGNCSEVEKSALNNYLKLFNGETIKVEATAKQ
Ga0214088_12989986	F069750	GGAG	MIITGEFPLQENSFFVEGAKYLIRERKQARGKKPQYYLVKLEPFQYVSSLFPTGEGESYTFDFEQKLYRLERKEHSVTLRFV