Scaffold Ga0214088_1058316

Overview

Basic Information

• Taxon OID: 3300020814
• Scaffold ID: Ga0214088_1058316
• Source Dataset Name: Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1173
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.6629
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053881	Metagenome / Metatranscriptome	140	N
F070633	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214088_10583162	F070633	GGAGG	MGLRDKSKNRIVFDVSHSNSDDGFTYSVRQHIPLGPKRCTSSYNLVVVPLSDGIMTSIERENFNISMDTEGRLILTRKDRKVQLVFDYGSGFMTGVLGGVLYDTFEIPKKEETNYHG
Ga0214088_10583163	F053881	N/A	MKAIANISKDSLGEKEGKLYSKVYRHIVQNFEIDEIAADQIAMAIVNQKCILLPRLLSGEDVDISLASESIRKWLSEYRLTPKSREKDKEVTINLSAIIEEIHREREDKS