Scaffold Ga0214086_1313140

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214086_1313140

Scaffold Ga0214086_1313140

Overview

Basic Information
Taxon OID	3300020813 Open in IMG/M
Scaffold ID	Ga0214086_1313140 Open in IMG/M
Source Dataset Name	Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 megahit
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16725
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Toronto, Ontario, canada
Coordinates	Lat. (^o)	43.5479	Long. (^o)	-79.6609	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047561	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214086_131314016	F047561	GGAGG	MTVSNIEPQNIVPDFGTLKRGKLDILVNWNITSATKTDDMGNEYTEWQYESVRINWVLPAVYESEAAIQAYLNANYDEGENILGWAQATRVSKSSVGT

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