Scaffold Ga0214219_1012963

Overview

Basic Information

• Taxon OID: 3300020735
• Scaffold ID: Ga0214219_1012963
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1541
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012869	Metagenome / Metatranscriptome	276	Y
F034150	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214219_10129632	F034150	GAG	MKGTNAPTKPEFIGQIVKFKSPHANVTLYDIAQLSPRYGHLEWCALNDPTEQQKTNAKEL
Ga0214219_10129634	F012869	AGGAG	MIAIHTKFIKPTNSRGARIKAYTANWGDRKGFSVTIPYPYDQNYHLSHFEAVKELVKKHKLEWSLSDMRYGDSADGKGYCFCFNHSTVGENQ