Scaffold Ga0214201_1014057

Overview

Basic Information

• Taxon OID: 3300020732
• Scaffold ID: Ga0214201_1014057
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1596
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038566	Metagenome / Metatranscriptome	165	Y
F048775	Metagenome	147	Y
F059676	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214201_10140571	F059676	N/A	MPVKSIGITNYSSRPMEKTTSMNKNVADHGNKTHYNKVGK
Ga0214201_10140572	F038566	N/A	MSKINIYVNSKNRKSDESPSNFSVIIPDGLLKCDANEYFSLSVNSFYCYNDFYQCNINSNSFKIIFRTNLNVVYLTTNYNLNIGNPNVYDLMTDINSKLSGYLTCTYNEIKNKITYTRTYAQTTNYYNMYIYCVNSGSFFGLTNNVETLILTTGTESTYPININTIKALSIGIDGDISFNYNNMESNLTNSLYKASDLIFQMGLNVPRGYLLDYQNVDGGDSFCFNLGNKDRIKYFILSVYDQDGNTISDMTDYIIHMQFTINKKSQTELLLKSLIDYNKQIYLIVGHIFDLIYKYLNHN
Ga0214201_10140573	F048775	N/A	ATAVIGTGASASIGGIYTNSKRMRFPLNNALNDLKLSVNARCVVEMCNIPSITNMAGKYVIVRLVTSTQDKTCDTKKFLNGNPILLSMAAQSNVGSTNLLYNASEFFYNINVPSTLFSNGYIDLELEVPSATANIDFITSKPLSTFFLNLIIVDEDPQITKDLTLAPPIDYKNYNVNLPIKQY