NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214201_1008962

Scaffold Ga0214201_1008962


Overview

Basic Information
Taxon OID3300020732 Open in IMG/M
Scaffold IDGa0214201_1008962 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2206
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038078Metagenome / Metatranscriptome166N
F039102Metagenome / Metatranscriptome164N
F045533Metagenome / Metatranscriptome152N
F045559Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0214201_10089622F038078N/AMAAKNERKCTAEMKKLKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKAKVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNKEWFHEMIKSMNTLRDLHPQWHLTKQDVDRYSTTCPCSQCSTEEDREDTISSSISKLNI
Ga0214201_10089623F045533N/AMAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEKQD
Ga0214201_10089624F045559N/AMDLTFENIRQTTQASELRKDVAKENYKYVKLTRISNVINSLHSTDFSNEPLMHDRMNRIHILKWKIKDVNPNWHLTDQVTLMEHQILDFLDGIDHMKPWNEIGNKLKYMALFSIIENLKKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS
Ga0214201_10089625F039102N/AMNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPKLVEFMTETSKATHSDKVEPIETEEVPKPSISN

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