NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1013360

Scaffold Ga0214170_1013360


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1013360 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057099Metagenome / Metatranscriptome136N
F065414Metagenome / Metatranscriptome127N
F073066Metagenome / Metatranscriptome120N
F093242Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0214170_10133602F093242N/AMEYSNPEKDKIIDIIQDIMNRIDINTNYNNNYENFLRMYAAIRKLKTKEPDLKFKVSNIPTSENNYFFRKRNEN
Ga0214170_10133603F065414AGGAGMSEPEVVINLNNLEELNIQRAKGLRKELLYIIRNRAYRQLYSLLNKIAASKKEKDNKEKFKLIFKVLKRIKAMEPDNHLNLASYIVSRNGV
Ga0214170_10133604F057099N/AMKILRKDWELINKIAWNILNLKLEDSKKTLNLGSSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYKGANRLK
Ga0214170_10133605F073066N/ASTMEENLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINRYSE
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