NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214251_1021436

Scaffold Ga0214251_1021436


Overview

Basic Information
Taxon OID3300020729 Open in IMG/M
Scaffold IDGa0214251_1021436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011367Metagenome / Metatranscriptome291Y
F022358Metagenome / Metatranscriptome214N

Sequences

Protein IDFamilyRBSSequence
Ga0214251_10214361F011367N/AMEESKNLEVKEIDSHWSKEPSESESRCHNSISHELEILDRILSEMISNIGNSSEDTILLKLRECLGCISDIIIHASQFIDQTQAVEREHPIEFNSLQEGIRINMTKTLTITSKLRERNLLQLLPLVKDLTLDLS
Ga0214251_10214362F022358N/AEIIAYASCTMIAIAIIIVVVIVDLEKTCTKMKNPPKTKIELINLEESDEDPFDLAMKCLDESSDSEDYDEDYGEGTSRGIPMFTEEASEIISRAHSFIAHEQETLDGKLDEIIYEFEGSSENDMLQYLRKCFEIIDDSITWANQFLDQAIEKQVDSFTGFYYEMHDDAEIAITKTLTIISLLEEKNFFSLIPVVEDLTSEIDQIKVIVSNTTLEQVEETLKNYASKRSLNRRKIEDF
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