NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214202_1007477

Scaffold Ga0214202_1007477


Overview

Basic Information
Taxon OID3300020728 Open in IMG/M
Scaffold IDGa0214202_1007477 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2166
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N
F025270Metagenome / Metatranscriptome202N
F032250Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0214202_10074771F025270N/AMNQETLENGNTLRSLRVRQATKASKFKLKRQWQKIAAEALAMLNDVKTNEINTSEHNMAVFNEIFIKIQELRRLDPEREINQYALAQAVITKY
Ga0214202_10074772F013610N/AMETSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILEIDPHWKLISWPHITIGRIFCSIDAIVIADKWDCETNKFLFNEIKDSMTKLKRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0214202_10074773F018161GAGMSELESKSDYSARQQVVRKIYRVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKPFPALNSKR
Ga0214202_10074774F008351N/AMESDQETELPEKCSEELVHTVRESVEKLFLLVNTEFSRPSASNEEEDFSLLKQICEAKANILKDNPYWSAFDHTTLLSTKALGRLDWLDAEGPWDGVRNVENYKVFKETLRELRECNPNWKLEEQEIIRRVRCSYCGTVKSIPDKKTLLENNPEKQEVNSL
Ga0214202_10074775F032250N/AQMCTVEKEKSFLKMQNEGNSSQAEIGRGANTISTQVFKERDTYLQNILQIMEAVKEETVYQDNWLQYAVLHQNLMKLKEIDPNWKLVSYYEGDCIRLKHYSCSCF
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