Scaffold Ga0214246_1008362

Overview

Basic Information

• Taxon OID: 3300020727
• Scaffold ID: Ga0214246_1008362
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1971
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N
F055422	Metagenome / Metatranscriptome	138	N
F062460	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214246_10083622	F054566	AGG	MEEEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKNKTNK
Ga0214246_10083623	F055421	N/A	MEEFTNPYKETNIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRGLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVVLLHFMTVAICLPSGEEIESNLIKLTIGY
Ga0214246_10083625	F055422	N/A	MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHIRNASPPNRDRNPPDRNRDSLDIDNYSETEPLITEV
Ga0214246_10083626	F062460	N/A	MNLEKSISEAVTTAVREIRQESCIEKQVKSLMKIYDAIVVKDNEISTESSLKTTRKRKRPISHE