Scaffold Ga0214178_1004321

Overview

Basic Information

• Taxon OID: 3300020718
• Scaffold ID: Ga0214178_1004321
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2496
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029568	Metagenome / Metatranscriptome	188	Y
F043882	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_10043212	F029568	N/A	MNNRYDLADTHIVIYFKSLPKFEEARELCLQEDNWLRHNYIRENLVVEQHTGYGVVYQTSTGKPMVMGGVFRDDRYPKNVAKMINRLYTFPEFRMKPTDMTDGFRVTCSLISALEKVNNYDLYLITMQNRNRGGKRWWDTWVNQMAIASNNKWTLGDGYIQTCAWPVQKCWQNFVYYETVPGAFAKWNTTLINDAEWNQLEEGK
Ga0214178_10043214	F043882	N/A	MGTFYISSPELAYVHVPRTGMAMKKIISDWLKPNFNLNDTDEWMINHPSLEMVREHIPGGKTLSVVRNPWQRVYSFYRKISTEGYWLDWNGKTLLDLKPINEWVADYCNPDVPFEFPRWFNKTTNQIDFLNYNGNWVDFIIKAEELETGFIPVKEYLGCNKPLPDLTGYDHWEFKKYFNDDSIKHIARVHERDIDFFKYSI