Scaffold Ga0214178_1003056

Overview

Basic Information

• Taxon OID: 3300020718
• Scaffold ID: Ga0214178_1003056
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3217
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_10030562	F026556	GGAGG	MTSAVIKLLIGIAFIITALAIGPIIGIWSLNTLFPVLNIPFTWQTWLAFNILFSGVVGARLKK
Ga0214178_10030564	F070810	N/A	MIQDSMETVNKVYEIRIPWDNQKEFWWNELCADIIEVFGLPGGRYTSHPYSDYMLFYFNSKKDYQLCQILISDKI
Ga0214178_10030568	F033308	AGGAG	MNYLGGKLMTKTAQQISDELIYRMKTTSLNKFEIKREVGPNWLPDGTIPFDIRATKGIAIFTVWAESVQDAEDQVSQFLEKDENE