Scaffold Ga0214178_1001289

Overview

Basic Information

• Taxon OID: 3300020718
• Scaffold ID: Ga0214178_1001289
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6019
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F004924	Metagenome / Metatranscriptome	418	Y
F005705	Metagenome / Metatranscriptome	392	Y
F083613	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_100128910	F004924	AGGAG	MKDAILVKLAEVEAMLLEATCDGAQLAELECFNEVENAMSTLLQTVDYYVD
Ga0214178_100128915	F083613	AGGAG	VGYFTDCDFDSTLDMIDCVNEVVERHVRKMERCTPNELGLDMRSGPVYIDRAEEVIAVSHSSAIDYYGGFEYIKEDEGRKTCGDYTFFTTESSRVQDCFDHLNERETEESE
Ga0214178_10012894	F005705	AGGAG	MKIVIKVPQKTRAHFVLFAENTPFKPKRVESKVLYKRNKKHKGRDYE
Ga0214178_10012896	F000652	AGGAG	MTGFQSKRAMANSKGAGMKTVRIETLLTQELEVPDTWEREDVLDFLAEYQSFRTAFQGVSNEDQTARIVDLGVVEERVTEMGEEAFDE