Scaffold Ga0214207_1012375

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1012375
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1104
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029335	Metagenome / Metatranscriptome	188	Y
F062427	Metagenome	130	Y
F071946	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10123752	F062427	AGGAG	MSKALVKRINKAFGKIYDMGDSGLDYMDGHVALDAALMQHFYDETLDTLSKEMLETLAVQLETVVEDAEFDLEA
Ga0214207_10123753	F071946	AGGAG	MYNVVNNPIPKTGLFATPESLEQLMEYCQRFTGQERVIAITVATMALNLSHELVENNILNKEVFI
Ga0214207_10123754	F029335	GAGG	MRTITTQNNGNIYEMSITEAIEIVQDYARLNTGGDLLQATEEMMHLADCNNLPIRQKVGIRRFVRDMSELFREAV