NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214207_1008760

Scaffold Ga0214207_1008760


Overview

Basic Information
Taxon OID3300020716 Open in IMG/M
Scaffold IDGa0214207_1008760 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1395
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061527Metagenome / Metatranscriptome131N
F075720Metagenome / Metatranscriptome118N
F100357Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214207_10087602F061527N/AMSNYFEQAFSEILSAIKELTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGENNPKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG
Ga0214207_10087603F075720GAGMVNQEDRNFKLFIGGLEMVLGLTKTAITILEYNLSGIVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFESHLIYLIQKPRDQWAQWQLKEHIYSVIESEFPKIIQKLQSSILDHSWELINGICPSLLS
Ga0214207_10087604F100357N/AMDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVI
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