Scaffold Ga0214207_1004587

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1004587
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2229
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F019778	Metagenome / Metatranscriptome	227	N
F024477	Metagenome / Metatranscriptome	205	Y
F057095	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10045871	F019778	N/A	MSSNVASQAELIFLYIGESRLIKRISNDILLVLHEDAKSINTIKLKELLQFKIRGRLSYLNHLAMSTVKEEAKYASALYTQLDSLLAILSSDDKVTAIKLITKICSAYRASRETVQSTAQTSNNIEKMEIG
Ga0214207_10045872	F017597	N/A	MKIFRSEKLLIKLAIKRKELIKTIKNSKTALIKIEMITRILITALKAKQVIAIRFQVNRTNNLQIWGQKS
Ga0214207_10045873	F024477	N/A	VSYDIIKNSSKSSSFELLKSSSFELLIKNITLIEKVEDYYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLMELERLQMQKINELIENDLNEDL
Ga0214207_10045877	F057095	N/A	HNEKCRILKSKDIVTLEKVSIANKLLIKTLSDETRSALKEQLALVSKVGSTFTNLSLMYTYIENNDSGLQLEAKSRQWSNEYQET