Scaffold Ga0214207_1003086

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1003086
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3054
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022576	Metagenome	213	Y
F046152	Metagenome / Metatranscriptome	151	N
F062234	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_100308611	F022576	GAGG	MTIDLNEHMEKKKQERHIAAYDAIGAAVDGMSIGTILHILSVFSATVLDQLDEPERSKAAMVFASVIIETNVKPEGSIQ
Ga0214207_100308613	F046152	N/A	TGLDLSGQTVVHKFWEPTNANLFAGTQEFANMAAVHSWNYATQPILQSYHERHPESRMALNDRTVDQIIADRILKQEQQRKAWLDDPAWTIYGTVGPDTSCTTQFDSAGPIRKPWEML
Ga0214207_10030862	F062234	GGAG	MRQWIVRHERDGDDIRALWENDNGDRWYVQVVVNGEVQW