Scaffold Ga0214207_1002242

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1002242
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3931
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10022424	F080791	AGGAG	MATYIYNGDGEKEFPTLGLTVKNGDTFDSADEIVNADVTLASAPKKTTPTPVAATTTTQG
Ga0214207_10022425	F002722	AGGA	MSVGRTQLRSTLYNYLTGANIATLNQIFTSFPKRINFQVGATAGQMSRSALVIFIQSERETRLAIGGATSGWKRVDFTVVLQLFHHSLQNNAEDAMTDFDTLVDNIKNTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETWAEIRFDVTQMIQA