Scaffold Ga0214207_1002042

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1002042
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4234
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020485	Metagenome	223	Y
F035995	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10020423	F020485	GGA	MKLFCNKNHWEIKNGKLILGADTDEKLAEQLTKMMARLEAEVRLDIYDQICAIDFVNNRKQIVKNGIENVALHVQDICAQIAIGESK
Ga0214207_10020424	F035995	AGG	MSVVTPVQVESRLKDLSKLIDEAHDELVSAESRYHDSKAQYEIKMATARLDLAKRTSPTGKNYTVGEREDMALVLNAELHTQVASAEVIVKANRANVARLRVQVDIARSIGTSVRTGMDV