Scaffold Ga0214207

Basic Information
Taxon OID	3300020716 Open in IMG/M
Scaffold ID	Ga0214207_1001986 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020716 Open in IMG/M

Scaffold ID

Ga0214207_1001986 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4332
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4332

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026810	Metagenome / Metatranscriptome	196	N
F031767	Metagenome / Metatranscriptome	181	N
F033695	Metagenome / Metatranscriptome	176	N
F055458	Metagenome / Metatranscriptome	138	N
F058942	Metagenome / Metatranscriptome	134	N
F088320	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_100198610	F058942	N/A	MNKSSSIEENNKVVQYLTEKIESLELIENFYNKVQDLLGQGVDIKFPPDLDFNYHRELIKIRKQDISFARWTFQLQVIRLLSGRPVPIKRLQWTG
Ga0214207_10019862	F055458	N/A	MATFIKGSMCEILALISAQLKELVKELDKFPLAKRILVENEVDEATDKLIELLTELQLTFVIETETEDS
Ga0214207_10019863	F088320	N/A	MSQVSENRRREIEDSKRKLAESIMMINGLLSLLEGHKRMLSERNQADPSNGKISIAKEAVKIMADKVKEVLDLNELRLEENIVTQ
Ga0214207_10019867	F031767	GGA	MNNNPINQKKIIVKRLERKPRQNYVKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKKDVSTNKNS
Ga0214207_10019868	F033695	N/A	MEGFNQEFKLAMEEVQELTRRSAMYSSRGNNGPTRADIKAIQYYRIEVSKRIDYIQDMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLDSYVKVLEKFKNETDYSYWKDYISIHENKILEGS
Ga0214207_10019869	F026810	N/A	MAASINRRILTMTNEEHVDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKEKVNDPVLVNKLGVVTNQALVLNPSQIEQSQNSVLDLSLPRQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214207_1001986

Overview

Ecosystem & Geography

Associated Families

Sequences