Scaffold Ga0214207_1001204

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1001204
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6350
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009720	Metagenome / Metatranscriptome	314	Y
F022104	Metagenome	216	N
F075600	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_100120411	F075600	AGGCGG	MKETQIQHRSFSAFTSWLRCGKAFELERNLQAPSEPAWYFVGGSAFHSAAEKFLLAEHQKKLNKAKYADVPF
Ga0214207_10012046	F022104	GGA	MTSTDITTIAYNAVFTIGATGTGIWYVFKHGVQNVLRQEFNDIKDIKHEVTPNSGGSLNDAIRKQVIPMVETLVERQQNIAVEVAVLNGRFEQHIREHNA
Ga0214207_10012047	F009720	GGA	MRNPLKKKYIHETTGDVLTFSEQVSWWVQGIIRNWFFVIGWTLVTVTWWICPHWFGDDASYVKWMNLASWLAVTVELIIGIAMIGQTKRDALIIRHILKLEKQEIEHLQDLLEEDK