Scaffold Ga0214207_1001190

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1001190
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6454
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F069612	Metagenome	123	N
F070807	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10011902	F069612	AGGA	MTCRVCKFFVFNQNDMMGACKLNPVVVNKMPQDWCGQEIPKEYEEPGITITVAPKATTVAQETTYDINTDEVKPKRGRKNAGTKE
Ga0214207_10011906	F007166	GGA	MDELYQVMTEMEQRLEIALDNMEFGTELSQDDVDVIRAACGKPNNTRNNLLQTVFEDFGNVFGGSNV
Ga0214207_10011909	F070807	GGA	MEVLIKKIKENKDGSAEVHVHYDKEGLHFLVQQGLTMTLVEAIMMDRTGTMFNVSSILKTVPKKTVVKKQQTKKK