Scaffold Ga0214207_1000864

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000864
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8018
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021463	Metagenome	218	Y
F075594	Metagenome	118	N
F082043	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10008642	F075594	AGGA	MSSTFSVTRDQIIQLALRKLGVLELGSTPDSETVANASLALNLFVKQMQTEGLKLWTVNQLVLPLVNGQTQYSIGPISQNPSVDLDTDKPLKVIQAWLRQTTVTPPVDTPVQLLSQQEYMTLGSKFSTGVANSIYYEIRQNTGNMYVYLTPDYNAAYQYDLYFMAQQPIQDVNYGSSVPNFPVEWMNTLVWNLADQLAIEYSLPAGHRQEIAARAKTYREQLTDWDVESVSTFFQADLRMANLTFGQPN
Ga0214207_10008643	F021463	N/A	MSDQLETRVVRLEVYSKNHAEDIRELRESHLDMKKAMTSIEKNLSQIKYIAIGALAVVVAQSIGLDKAIRMILGS
Ga0214207_10008649	F082043	GGA	MAESFSYKITTESELFTFDFTQVLAAGETILTATCAIVVMNGVDPNPSNLLLGAAVIVNKTASQRVIGGLAEVTYRLEMTITTSLTNTYVGVGDLTVYDATQV