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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020716 Open in IMG/M |
| Scaffold ID | Ga0214207_1000638 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9871 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002260 | Metagenome / Metatranscriptome | 577 | Y |
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F026558 | Metagenome | 197 | Y |
| F028717 | Metagenome / Metatranscriptome | 190 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214207_100063810 | F002260 | AGGA | MSVPYQRISNATVADIQFYDPAAYRRAQALNIDWDPYFKVGSQEWLYKLEFGWWNKYCDTVLGAYYYANLPNGALISSFNPSQLIKNDQTLIRLDVFGAVLVFYESLVTEVSNMNDVDKMNYDFAKDRCDREWTKALELMNFYDLYGNSPNGPTTKLEENWTADVDYFNGDRRFF |
| Ga0214207_100063811 | F011761 | AGGAG | MAYVLGGSDGENYGFTFAIANFALRAMHESMGLVNMTNVVTPTQGNQFLVPNFAPITYQDFNPAASPATAPWYTGNAAVQNPALTQTSINASPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTQAFANGTAQESGGTATPVGQTTGFKPTPLNTYYATSADGYTRVYQLGALELVPSGTTISFTGNVSTGGTAGFTTNSVLELIRFAKQQFKVARMSGNPVVVLDSNGYVTEATSGAVGGSGSSLTRLLSELTGGAVSGPSSGGSNLSALGNELLATGKIENVYGCMVMFTTFLQYSATRTINGTANSPALVGAYFGDSALFTVMKEGLQIKIGEVPGGLQNWLTGVGYFGSGVGDQRRGGAINIVQDARS |
| Ga0214207_100063812 | F028717 | AGGA | MDKVSLGGNDSALAQGQGQVSPDNSAEQQVNAGAIRKSTTNSILNALSNASGQNFESVEAALSFIARTTAQQTTNVGNAQPVEEPVQQRSNRITTNDLHEQFSKLQGDLARKDQALREKELDGDIQRAMGDRFDPDLLDYALSKVKSNIQWNGDGTYSIINNKGQERYGMDGNPLTLQGLVQEVAQGNPKLLKQSNLSSGSGLRPGQSSFAGAPHETMPDYAKDPAAFNNWAVKNGLGKNIGLKAMQVTATSNLPIGQKIL |
| Ga0214207_100063813 | F026558 | N/A | SELAKKGNVYTAIIQQMYNYQYAYLGGYIFKQQVRKKRPSEDSVLWNDLITNTVAQPLCRYVVDTINDILFEPGIMRDLRFANPNGELVNTDNAEWVNLFVMDCDLNNRSLTSFMEQVGDLTSIFGHCWIAVDMPQTSEGNLGRPYTCAISPVDVWDWEWQYYGGRPILKYVKIKEMEDEEYYYIKCYHLGDSENPSSWASYRLPKMALTNVINTDADCLGSGTFPPGMAIPVFIAYGRRDPRIIDLGVSDIDAASDAMRELYKLECEAYTALQFAHTIIRAEKGIAIPVHAGAIVRALKDQVEAIKIDTGDVEQIIKKQSDILTTLEGLVGMGGMRKDSQQIASGISIIEERKQLHRVAKSKARLMEVTEGLIFTFAARFMGMRWAGVVNYNTDYEAYDTNYRLALLQQAQIMAGDSEIVKALITKELIGLLAPAENTKTYEDAFIESMPDSNVKDLLTEEASNALSSDNLDSMVPVLSKDYVEPELNEPNDKISGDQPQGLNKAQESDVGNFGDPNNMTLLGGPGTPMTPMGTSYYPQQAVAVQITGLNTGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |