Scaffold Ga0214207_1000359

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000359
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14232
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003007	Metagenome / Metatranscriptome	513	Y
F009449	Metagenome / Metatranscriptome	317	Y
F017776	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10003591	F003007	N/A	MYKEGRQFVVDAKKEIDGVVGDIKGIQNDAKGIFGFFSKLFGGKEKPQATINQTPVKAKPKKRVEFDENQIYAQVADALTKFFHAYNGLKAYTKEQEELALTANNEEGNDIAIKLVIANLQMEKLNEEMREYMVYHVPPEMKDLYSRVNKMIGHIANQQALARKAELDKKRKAQWLKRQRAEEIQDKAIATVITFLM
Ga0214207_100035915	F009449	AGGAG	MKHDDIKEDKKLIKKAFSMHDKQEHPGKHTNLSNLKKGGKVHKMKQGGPTGKDMRAVGRNLARAHNQKPGSK
Ga0214207_10003593	F017776	GGA	MEKITLSTPLVNNIMAYLGTRPFQEVFQLIQEVQKEAQAQTPETPNV