Scaffold Ga0214207

Basic Information
Taxon OID	3300020716 Open in IMG/M
Scaffold ID	Ga0214207_1000186 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020716 Open in IMG/M

Scaffold ID

Ga0214207_1000186 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	20066
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (67.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

20066

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (67.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008072	Metagenome / Metatranscriptome	339	Y
F009735	Metagenome / Metatranscriptome	313	Y
F016782	Metagenome / Metatranscriptome	244	Y
F017814	Metagenome / Metatranscriptome	238	Y
F020318	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_100018610	F016782	AGGAG	MSTEASTLYVAATESLVSESSATSTFEKMIAVAFTHSSGETFTKELRETEKQIKKDFEISSMPGPWRSAKSVIQTALKMGIGLVDDNGGFYGKTHLQNTIKALKTDVKEPLTNEAYATKVCSLLCNVPEELDAKKVYKLVITFLEGVV
Ga0214207_100018615	F017814	GAG	MKIPSLYQQNKELVMSQQNTFDFNGFNALTERKPAGLQIFLAQQLLSNALWTMENYDNPRQTEVRDALNALKTLRVQLKADALARA
Ga0214207_100018618	F008072	N/A	MKRKVSKDRRYKRSIWTQNQKLEAVSTYLMLGNMAETAVVTGIPLQTLKIWKTTDWFKDYSLQLQSEDVQQMDSNLKRVIQKALKATEDRIDLGDAQFDQKTGEIVRIPIKAHVALKITTELLTKQQKLNENPIKEEVEKTIDSRLLKLSEEFARFANARANTIEIEAVDVTPNTTSIEA
Ga0214207_100018621	F020318	AGGAG	LEPVSPDNFDEWKHHPVTKRLFKMLSDDREVMKEGLINSSFDFEEEVKGRCRAIAIILSLEYEDLFEVKNNE
Ga0214207_10001863	F009735	N/A	MMTGVVEATSTKEVNTKFGAKPTYSMKVNGNWVKCGFKDPGVQAGYEVEFDGVTGTYGMETKVVSILKKTATPVPATLATDSKVGVLGPSKHGYSGYKEKVFPIPPLHGDRAIVRQNALARATDLYIAARGGKSFELEMSTLELVIALARKFESYTAGDIDMAEAMKEDSEENIAAQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214207_1000186

Overview

Ecosystem & Geography

Associated Families

Sequences