Scaffold Ga0214207_1000062

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000062
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 34389
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (86.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009720	Metagenome / Metatranscriptome	314	Y
F095139	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_100006244	F095139	GGAG	MTKTPQNRAQKRQSMTSKNDNVIVCWCDNGTTDGKFTEGLIYSVLTSDVPIRSAMRVQGNQIGRQRQNAFDFWYDHTDFNWILWVDSDIVLTEQALSAVWNECDPTTKPVVTGTYFVSKENEQALMTPFPALFNFTDDPYKLAYVHPLPVNVLAKVGAAGFGFLFMHRNAATKMREKYGSVPFFNETGVGEQFVSEDINFFRLMKEADVPLYAHTGATVQHMKRFSYDKAFYDMFWAAQKQQEEDRLQELADLDDE
Ga0214207_100006248	F009720	GAG	MLKRKYVHPDTGDILTFSEQVSWTIQSAIRNWWFVFAWTGLSTVWWLKPHIFKDNGSYVHWQLLASWLAVTVELIIGIAMIGQTKRDAQIIRHILKLEKQEIEHLEDIIEDMDTE