Scaffold Ga0214207_1000001

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000001
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 104385
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (73.81%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F045504	Metagenome	152	Y
F053029	Metagenome	141	Y
F053761	Metagenome / Metatranscriptome	140	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071904	Metagenome	121	Y
F086508	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_1000001102	F028168	AGGA	MTEKPVIELISELTEFNDMKTYMNDSDLDYALDLIVKLIAKPDVPSSKAPDLIVKMQALSAKFAMMSRYYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSARYGA
Ga0214207_1000001135	F071904	GGAG	MTVDYSRVAATDVRNAIWAQLQSYGILHASDYVPQGSNGLTTALCPIIPSQQVPEFNNLLPGKTYITYDIIQKNYGVQWWLSQETMVLQIISRSNAQILTISNFLTDFVRRYEYSAADINDVAHTANSPFKFLYCRLEAANPIQPFQDEGGFMSGDFSFMYTYTRSVDEGTNTNTGRYI
Ga0214207_1000001138	F053029	AGGGGG	LQTINTNSQEKIYLEVYSNGVLSQADSLPTLSIYNADSDVYNPGGVISQTPLYTNLNAYDEPATGVYSYQLTPNLTSVNMVLEVVWSYTQNGLSVNTTDYYSIETPYASIPETMDFLGYSGTVGAANYLDPNTIIKTEKMARTIIEGYTGIKFYKYYGFQEIYGIGANTIQLTEKMLSLDQIWENQILVFDGTTSPVYNTFGYNTEISPTGYQLRIWYPAWPDGWNNEMDPTIYESGRFRDTYLYRFVGEIGYNYVPEDIKLASMLLQQDIMSNDYNWRNKYLSQVNLSEISFKMANGAFNGTGNVMVDNILDQYRKANIVII
Ga0214207_1000001139	F086508	N/A	MTRGSQMSFTDLKITELRKVADSFAIDTEGLKTKQEIIAALEEEGISYQMYAKFDNAEKQDIEVPEFEKQKREKKIMSKTTNQVLVKMERNNHSYQVGVFQFTQEHPFLAMSEADAQKIFDTEQGFRLATPREAQEYYA
Ga0214207_100000130	F053761	GGAGG	MGARTNYTIVTTDNPAQNINVYAHWDGDDSVAIMQNAIKAAMPRITMGDISYAVRIIIDQLTKHGRDSETGYGIYIGDEILSEEQYEYKEINFNNHMVTVGKMKFALTDFVAVLT
Ga0214207_100000164	F064358	AGGA	MLCYSCSKQKDQLHPCQSAILEGVSLFMCQSCIDDKFEPRWVIILAGRQKGAEFVRDYIIKHRYFGRPISAEEIVA
Ga0214207_100000166	F028070	AGAAG	MASIKYTVEMAKKIREIKVPVKGLKMEIRARPNYLAITIFEDNVMEYNESQRMQLMEYLLLVRKLIMAYGTPCEIEGIKYTNDQPK
Ga0214207_10000017	F045504	AGGA	MFNLSDTCHDIKFTLTPGEDTYHIYTDKYFFIIPRSGLQNLQYGLNAHYKHTELLFGFTDEELTILQKKRPKRSAIDEINYQIERKSYNGELIAPSDLISRLPYMSQSRNRNGKQNIADSRWKNAIRNENPKVLRLIEWFEEEESYIRTKFPDVHWTKGTFSISPCHIYPAKKDRGEDSWTPDKILRDLSIVNKCFDKISSSPLAGKHAIDENDTQIALDYLDTFDFHDLSISRQIFYHILTRRIAQNFYQTYFITDIDLDI
Ga0214207_100000170	F019426	GAGG	MRVLVFGSKDWHDYNDLIRQVTLLIEDNKHFYPDDKECIFVHKGNAGAENMITEYIGKTEKFLRQKGYKIKEELVRDRSSFSDVTMIESEPSIALVFGDSPRNRQCIKLLEAMGIPYRYFPK
Ga0214207_100000173	F041564	GAGG	VKPLEYNPSDEEHQEIMEYLISEGAAILDGIDENGEPIYKFDMDVLEEVMPELHAVMQEDMDQFLVDLYQQGLIEVSYDENLNALMSISEQGKIALAEAGFDLDDSEDTF
Ga0214207_100000189	F042147	GAGG	MLANGTIPTIEDDKDIYISLTALCEYFTQSSVNMEKEIQDVEPRNKRYALGLYDMMHTIAKEIVELGKFEAQRRMINSPEDLLKMIDKDPFGKIE