Scaffold Ga0214182_1000499

Overview

Basic Information

• Taxon OID: 3300020714
• Scaffold ID: Ga0214182_1000499
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14974
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050095	Metagenome	145	N
F082373	Metagenome	113	N
F096596	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214182_100049912	F096596	AGG	MTHTEYAYIQAGYKFEKGKTQADTLRAMLEKEHPRDRTEARRLIEQGRAEARQH
Ga0214182_100049914	F082373	GGA	MNYEAWIAEKVNSGKEVTISLCLLEKLMYEPAIKHWIESTAKKFGCKATIHWKDDVVTFYPVSAI
Ga0214182_100049928	F050095	AGG	MDWIDIVVGGIVAIFIVGGCLALYADAVNHPWGEDDEH