Scaffold Ga0214177_1001431

Overview

Basic Information

• Taxon OID: 3300020705
• Scaffold ID: Ga0214177_1001431
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4560
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214177_100143111	F033308	AGGA	MTNAKQITDELIYRMKNTSLNKFLIKREVGPGWLPNGTVPFDVHAKDGIATFTVWAESIQDAEDQVSQYLERDENE
Ga0214177_10014315	F026556	AGGAG	MTSALVKLIFAILLIIIAVAFGPIVGIWSLNTLFPVLHIELTWQTWLAFNCLFGGSIATRFKK
Ga0214177_10014317	F070810	AGAAG	MKEKTFKIEIPWDSQGNNWWNEICGDVVEVFGLPGERYTYHPRYEDMAFHFKSKKDYELCKILLSDKF