Scaffold Ga0214177_1000400

Overview

Basic Information

• Taxon OID: 3300020705
• Scaffold ID: Ga0214177_1000400
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11896
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F024484	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214177_100040015	F024484	N/A	MFTHEVFNRDIIVYKYSMLTPTNYIVNTKLFQEACQTAPENWGGRTTINKPTGNFFYDPWELKDEYKGTVWQTLYDSLPVTKGEARIIVLGPGQAYQSHADIDDRYHLNILGEECYLIDLIREQMHKLEQNGIWYNMDAGFLHTAANFGRRFRIQLVVRKLLKKNQLIIPIPITITTNMNNLDHARFIFDNTVSMWLNEANKQGYINEFAYTDSKAKFNIEYNKIDSLKRILPDEFKLS
Ga0214177_10004008	F004256	N/A	MKTKFNYYYNNVPGSGLCRNNLIYTSLISEDKKTFCQWYYNDTIYHKNQNQVVDPKLMEEKWHREIHYLSSMAWHNPDMVPKILEVNMSDRKIYLEIDGPDFWEQAGCNKANYNNVLPDWQDQMIAIIQAHKDLGWHKYSMHPSSYFLINGQLKSINYFFTYSDKEDTISIVDVESHIYSTRQDEMRKHLDSLGIEWDKPQPWAIMDQLCWESFRTNYPDEFIERVKCLI