Basic Information | |
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Taxon OID | 3300020694 Open in IMG/M |
Scaffold ID | Ga0214197_1000388 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13175 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (34.78%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016117 | Metagenome / Metatranscriptome | 249 | N |
F019600 | Metagenome / Metatranscriptome | 228 | N |
F021046 | Metagenome / Metatranscriptome | 220 | N |
F026810 | Metagenome / Metatranscriptome | 196 | N |
F031767 | Metagenome / Metatranscriptome | 181 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214197_100038817 | F019600 | N/A | MYAPDTDTSKLETGYNLEKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ |
Ga0214197_100038818 | F031767 | GGA | MNNNPINQKKIIVKRLERKPRQNYVKTLASLKGIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTNKNS |
Ga0214197_100038820 | F026810 | N/A | MAASINRRILTMTKEEHVDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSAEFEKIKEKVNDPVLVNKLGVVTNQALVPNPSQTEQNQNSALDLSLPRQ |
Ga0214197_10003883 | F016117 | N/A | MDSIHIELSPRLGLLIAAWRNFFTRLHNQSILTDNGFQYLLALLVDKLQEALDSEFYPLVLDWLKETLPKVMRCRGTVNLINQVPAHLWTSNHIFRHDYFVCLERRANRLSIPS |
Ga0214197_10003886 | F021046 | GAG | METNFVTNVHEVVYASFLSKDCPTNEVRILTKFYKVSFVVFKAGNVSYNAIMAANTIITDFFVSHHRLFAREIALEFVENILTLLFSYDGFWDFVNRLNIHFFYLSYRPQILQILSYHMSLTYGSEHYLEVYRLLPPYVSGAEDFSRERGKFFCFVTKRKEFFLFLFRIGF |
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