Scaffold Ga0214194_101811

Overview

Basic Information

• Taxon OID: 3300020686
• Scaffold ID: Ga0214194_101811
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2343
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nerrivikvirus → Nerrivikvirus srim2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F046110	Metagenome	151	N
F055384	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214194_1018113	F055384	N/A	MITKPTNTFLAAEFPTWIDLKVGTVMEVRKEGQTGYLVDHPIIEGDCVVQKWNCIEVRDEVECCVTV
Ga0214194_1018114	F021232	N/A	MKMRDLKQTYIIFTASDTVYCTAESYDLANEIIEADGLIDAVIQQVNHITSIEEGNPVTISYENTSTYDCTSDDVNDVRHKDHY
Ga0214194_1018115	F046110	N/A	MINRFDESLMHLHDQLSSITNHNVPVTLVNTIEQQVLLIQARQAYVTGHKQSYELILRELMEHIQLKLTGKN