Scaffold Ga0214194_101041

Overview

Basic Information

• Taxon OID: 3300020686
• Scaffold ID: Ga0214194_101041
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3405
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F051640	Metagenome	143	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214194_1010412	F080791	AGGAG	MATYQYNGDEVKEFPTLKLTVKPGDTFDSADEIISADVTLASAPKKTPTPSAAPDTTQGA
Ga0214194_1010413	F002722	AGGA	MAAGRANLRSTLYSYLVGAAIPTLNQVFTSFPKRINYQVNATAGQMSRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQIFHHSLQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA
Ga0214194_1010415	F051640	AGG	VSRLVPRDGFAKEVEIKRQSGSKVLRADKSGLYRAENPKDIKALKAEGFTEANLALHTQGDNDRGYTCLNCGFGSWFRKCSRCGHEYPESFNTDGD